Shu-Hwa Chen, Bo-Yi Yu, Wen-Yu Kuo, Ya-Bo Lin, Sheng-Yao Su, Wei-Hsuan Chuang, I-Hsuan Lu, Chung-Yen Lin (2025.05). Unveiling the immune microenvironment of complex tissues and tumors in transcriptomics through a deconvolution approach. BMC Cancer, 25, 733.

Ying-Chieh Ko, Ting-Yu Lai, Shu-Ching Hsu, Fu-Hui Wang, Sheng-Yao Su, Yu-Lian Chen, Min-Lung Tsai, Chung-Chun Wu, Jenn-Ren Hsiao, Jang-Yang Chang, Yi-Mi Wu, Dan R Robinson, Chung-Yen Lin, Su-Fang Lin (2020.06). Index of Cancer-Associated Fibroblasts Is Superior to the Epithelial-Mesenchymal Transition Score in Prognosis Prediction. Cancers (Basel), 12(7), 1718.

Cheng-Han Lee, Sheng-Yao Su, Kesavan Sittampalam, Paul Chih-Hsueh Chen, Fredrik Petersson, Yu-Chien Kao, Thomas O. Carpenter, Tsung-Han Hsieh, Eiichi Konishi, Jen-Wei Tsai, Steven D. Billings, Andrew L. Folpe, Jen-Chieh Lee (2020.05). Frequent overexpression of klotho in fusion-negative phosphaturic mesenchymal tumors with tumorigenic implications. Modern Pathology, 33(5), 858-870.

Sheng-Yao Su, I-Husan Lu, Wen-Chih Cheng, Wei-Chun Chung, Pao-Yang Chen, Jan-Ming Ho, Shu-Hwa Chen, Chung-Yen Lin (2020.04). EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis. BMC Genomics, 21, 163.

Shu-Hwa Chen, Wen-Yu Kuo, Sheng-Yao Su, Wei-Chun Chung, Jen-Ming Ho, Henry Horng-Shing Lu, Chung-Yen Lin (2018.05). A gene profiling deconvolution approach to estimating immune cell composition from complex tissues. BMC Bioinformatics, 19, 154.

Hangfei Qi, Virginia Chu, Nicholas C Wu, Zugen Chen, Shawna Truong, Gurpreet Brar, Sheng-Yao Su, Yushen Du, Vaithilingaraja Arumugaswami, C. Anders Olson, Shu-Hwa Chen, Chung-Yen Lin, Ting-Ting Wu, Ren Sun (2017.02). Systematic Identification of antiinterferon function on Hepatitis C virus genome reveals p7 as a novel immune evasion protein. Proceedings of the National Academy of Sciences (PNAS), 114(8), 2018-2023.

Sheng-Yao Su, Shu-Hwa Chen, I-Husan Lu, Yih-Shien Chiang, Yu-Bin Wang, Pao-Yang Chen, Chung-Yen Lin (2016.12). TEA: the epigenome platform for Arabidopsis methylome study. BMC Genomics, 17, 1027.

Tzu-Po Chuang, Jaw-Yuan Wang, Shu-Wen Jao, Chang-Chieh Wu, Jiann-Hwa Chen, Koung-Hung Hsiao, Chung-Yen Lin, Shu-Hwa Chen, Sheng-Yao Su, Ying-Ju Chen, Yuan-Tsong Chen, Deng-Chyang Wu, and Ling-Hui Li. (2016.06). Over-expression of AURKA, SKA3 and DSN1 contributes to colorectal adenoma to carcinoma progression. Oncotarget, 7(29), 45803-45818.