Kai-Yi Hsu, Chi-Tin Shih*（施奇廷）, Nan-Yow Chen*, Chung-Chuan Lo* (2024.07). LYNSU: automated 3D neuropil segmentation of fluorescent images for Drosophila brains. Frontiers in Neuroinformatics, 18, 1429670.
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1. Anton P. J. Stampfl, Zhongdong Liu, Jun Hu, Kei Sawada, H. Takano, Yoshiki Kohmura, Tetsuya Ishikawa, Jae-Hong Lim, Jung-Ho Je, Chian-Ming Low, Alvin Teo, Eng Soon Tok, Tin Wee Tan, Kenneth Ban, Camilo Libedinsky, Francis Chee Kuan Tan, Kuan-Peng Chen, An-Cheng Yang, Chao-Chun Chuang, Nan-Yow Chen, Chi-Tin Shih（施奇廷）, et al. (2023.02). SYNAPSE: An international roadmap to large brain imaging. Physics Reports, 999, 1-60.
Chi-Tin Shih（施奇廷）, Nan-Yow Chen, Ting-Yuan Wang, Guan-Wei He, Guo-Tzau Wang, Yen-Jen Lin, Ting-Kuo Lee, & Ann-Shyn Chiang (2021.07). NeuroRetriever: Automatic Neuron Segmentation for Connectome Assembly. FRONTIERS IN SYSTEMS NEUROSCIENCE, 15, 687182.
Chi-Tin Shih*（施奇廷）, Yen-Jen Lin, Cheng-Te Wang, Ting-Yuan Wang, Chih-Chen Chen, Ta-Shun Su, Chung-Chuang Lo* & Ann-Shyn Chiang* (2020.04). Diverse Community Structures in the Neuronal-Level Connectome of the Drosophila Brain. Neuroinformatics, 18, 267-281.
An-Lun Chin, Shun-Min Yang, Hsiang-Hsin Chen, Min-Tsang Li, Tsung-Tse Lee, Ying-Jie Chen, Ting-Kuo Lee, Cyril Petibois, Xiaoqing Cai, Chian-Ming Low, Francis Chee Kuan Tan, Alvin Teo, Eng Soon Tok, Edwin B.L.Ong, Yen-Yin Lin, I-Jin Lin, Yi-Chi Tseng, Nan-Yow Chen, Chi-Tin Shih, Jae-Hong Lim, Jun Lim, Jung-Ho Je, Yoshiki Kohmura, Tetsuya Ishikawa, Giorgio Margaritondo, Ann-ShynChiang, Yeukuang Hwu (2020.02). A synchrotron X-ray imaging strategy to map large animal brains. Chinese Journal of Physics, 65, 24-32.
Ting-Yuan Wang, Nan-Yow Chen*, Guan-Wei He, Guo-Tzau Wang, Chi-Tin Shih*（施奇廷）, and Ann-Shyn Chiang* (2018.04). Kaleido: Visualizing Big Brain Data with Automatic Color Assignment for Single-Neuron Images. Neuroinformatics, 16(2), 207-215.
Ching-Ling Hsu, Ming-Yu Juang, Pei-Wen Lin, Bo-Rui Liaw, and Chi-Tin Shih(施奇廷) (2017.09). Temperature-dependent morphology and characteristic parameters of annealed gold nanolayers. Physica Status Solidi B, 254(9), 1600855-1600855.
Po-Yen Chang, Ta-Shun Su, Chi-Tin Shih (施奇廷), and Chung-Chuan Lo (2017.04). The Topographical Mapping in Drosophila Central Complex Network and Its Signal Routing. Frontiers in Neuroinformatics, 11, 26-26.
Chi-Tin Shih(施奇廷)*, Olaf Sporns, Shou-Li Yuan, Ta-Shun Su, Yen-Jen Lin, Chao-Chun Chuang, Ting-Yuan Wang, Chung-Chuang Lo, Ralph J. Greenspan, and Ann-Shyn Chiang* (2015.05). Connectomic-Based Analysis of Information Flow in the Drosophila Brain. Current Biology, 25(1-10), 1249-1258.
Chi-Tin Shih, Stephen A. Wells, Ching-Ling Hsu, Yun-Yin Cheng, and Rudolf A. R？mer,（2012.01）。The Interplay of Mutations and Electronic Properties in Disease-Related Genes。Scientific Reports (Nature Publishing Group)，2，272-。
AS Chiang, CY Lin, CC Chuang, HM Chang, CH Hsieh, CW Yeh, CT Shih, JJ Wu, GT Wang, YC Chen, CC Wu, GY Chen, YT Ching, PC Lee, CY Lin, HH Lin, CC Wu, HW Hsu, YA Huang, JY Chen et al. (2011.01). Three-dimensional reconstruction of brainwide wiring networks in Drosophila at single cell resolution. Current Biology, 21, 1-11.
C. T. Shih（施奇廷）, Y. Y. Cheng, S. Wells, Rudolf A. R？mer*, and C. L. Hsu (2011.01). Charge Transport in Cancer-Related Genes and Early Carcinogenesis. Computer Physics Communications, 182, 36-38.
C. T. Shih*（施奇廷）, Hsuan-Wen Lin, Ann-Shyn Chiang (2011.01). Statistical Analysis and Modeling of the Temperature-Dependent Sleep Behavior of Drosophila. Computer Physics Communications, 182, 195-197.
Chia-Hei Yang, Ching-Ling Hsu, Nan-Yow Chen, and Chi-Tin Shih*（施奇廷） (2011.01). Temporal Dynamics of Site Percolation in Nanoparticle Assemblies. Computer Physics Communications, 182, 71-73.
S. A. Wells, C. T. Shih, R. A. Roemer (2009.08). MODELLING CHARGE TRANSPORT IN DNA USING TRANSFER MATRICES WITH DIAGONAL TERMS. International Journal of Modern Physics B, 23, 4138-4149.
C. T. Shih, S. Roche, R. A. Roemer (2008.01). Point-Mutation Effects on Charge-Transport Properties of the Tumor-Suppressor Gene p53. Physical Review Letters, 100, 18105-18105.
C. T. Shih (2007.12). Sequence and Energy Dependence of Electric Transport Properties of DNA –A Tight-Binding Model Study. Chinese Journal of Physics, 45, 703-707.
C. T. Shih, J. J. Wu, C. P. Chou, Y. C. Chen, and T. K. Lee (2007.04). Variational Phase Diagram of the Electron-Doped Two-Dimensional Extended t-J Model. Chinese Journal of Physics, 45, 207-210.
C. T. Shih（2006.06）。Characteristic length scale of electric transport properties of genomes。Physical Review E，74，10903-10903。
K. Y. Yang, C. T. Shih, C. P. Chou, S. M. Huang, T. K. Lee, T. Xiang, and F. C. Zhang (2006.06). Low-energy physical properties of high-T-c superconducting Cu oxides: A comparison between the resonating valence bond and experiments. Physical Review B, 73, 224513-224513.
C. T. Shih (2005.12). Electric transport and coding sequences of DNA molecules. Physica Status Solidi (b), 243, 378-381.
C. T. Shih, J. J. Wu, Y. C. Chen, C. Y. Mou, C. P. Chou, R. Eder, and T. K. Lee (2005.08). Antiferromagnetism and Superconductivity of the Two-Dimensional Extended t-J Model. Low Temperature Physics, 31, 757-762.
C. T. Shih, Y. C. Chen, and T. K. Lee (2005.06). d-wave Pairing of the Two-Dimensional Extended t-J Model. Chinese Journal of Physics, 43, 543-546.
H. C. Chien, Y. C. Chen and C. T. Shih (2005.06). Pairing Correlation of the Two-dimensional Hubbard Model. Chinese Journal of Physics, 43, 523-526.
C. T. Shih, Y. C. Chen, C. P. Chou, and T. K. Lee (2004.12). Absence of the coexistence of superconductivity and antiferromagnetism in the hole-doped twodimensional extended t-J model. Physical Review B, 70, 220502-220502.
C. T. Shih, T. K. Lee, R. Eder, C. Y. Mou, and Y. C. Chen (2004.06). Enhancement of Pairing Correlation by t' in the Two-Dimensional Extended t-J Model. Physical Review Letters, 92, 227002-227002.
T. K. Lee, C. T. Shih, Y. C. Chen, and H.Q. Lin (2002.12). Comment on "Superconductivity in the Two-Dimensional t-J Model". Physical Review Letters, 89, 279702-279702.
C.T. Shih, Z.Y. Su, J.F. Gwan, B.L. Hao, C.H. Hsieh, J. L. Lo, and H.C. Lee (2002.04). Geometric and Statistical Properties of the Mean-Field HP-Type Models, the LS Model, and Real Protein Sequences. Physical Review E, 65, 41923-41923.
C.T. Shih, Y.C. Chen, and T.K. Lee (2001.11). Phase Separation of the Two-Dimensional t-J Model. Physica C, 364, 178-181.
C.T. Shih, Y.C. Chen, and T.K. Lee (2001.01). Revisit Phase Separation of the Two-Dimensional t-J Model by the Power-Lanczos Method. Journal of Physics and Chemistry of Solids, 62, 1797-1811.
C.T. Shih, Y.C. Chen, and T.K. Lee (2000.11). Pairing Correlation of t-J Type Models Studied by the Power-Lanczos Method. Physica C, 341, 113-116.
C.T. Shih, Y.C. Chen, and T.K. Lee（2000.04）。Numerical Study of the Pairing Correlation of the t-J Type Models。Chinese Journal of Physics，38，300-303。
C.T. Shih, Z.Y. Su, J.F. Gwan, H.C. Lee, B.L. Hao, and C.H. Hsieh (2000.01). Mean-Field HP Model, Designability and Alpha-Helices in Protein Structures. Physical Review Letters, 84, 386-389.
T. Tohyama, C. Gazza, C.T. Shih, Y.C. Chen, T.K. Lee, S. Maekawa, and E. Dagotto (1999.05). Stripe Stability in the Extended t-J Model on Planes and Four-Leg Ladders. Physical Review B, 59, 11649-11652.
C.T. Shih, Y.C. Chen, H.Q. Lin, and T.K. Lee (1998.10). d-Wave Pairing Correlation in the Two-Dimensional t-J Model. Physical Review Letters, 81, 1294-1297.
C.T. Shih, Y.C. Chen, and T.K. Lee (1998.01). Phase separation of the two-dimensional t-J model. Physical Review B, 57, 627-631.
R. Eder, Y.C. Chen, H.Q. Lin, Y. Ohta, C.T. Shih, and T.K. Lee (1997.05). Low energy excitations of the t-J model in 1D and 2D. Physical Review B, 55, 12313-12317.
T.K. Lee and C.T. Shih (1997.03). Dispersion relation of a single hole in the t-J model. Physical Review B, 55, 5983-5987.
Y.C. Chen, C.T. Shih, and T.K. Lee (1996.04). Two-Dimensional Infinite U Hubbard Model Studied by the Power-Lanczos Method. Chinese Journal of Physics, 34, 388-391.